MCP Directory

ammawla/encode-toolkit

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MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

Direct install

Run the underlying MCP server directly — without Agent-CoreX routing.

npx -y encode-toolkit

Use with Agent-CoreX

Agent-CoreX intelligently routes which tools from ammawla/encode-toolkit your AI agent actually needs per request — reducing token usage and cost.

agent-corex.json

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

Route ammawla/encode-toolkit intelligently

Connect in 2 minutes. Only pay for the tools your agent actually uses.

Installation Guide

Use with Agent-CoreX

Recommended: intelligent tool routing, lower costs

uvx agent-corex mcp add encode-toolkit

Agent-CoreX selects only the tools your agent needs, cutting token usage by up to 60%.

Direct Install

Use ammawla/encode-toolkit directly without routing

npx -y encode-toolkit

New to Agent-CoreX? View setup guide →

ammawla/encode-toolkit MCP Server — Agent-CoreX